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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcatgtccaagcattttacaaagatttgatctctggtgtttcttaccttcctttattgtgtttccaaatcaaatgcagATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAG

Basic information

species Arabidopsis thaliana
transcript AT2G37980.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37980.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------gtgagttcatgtccaagcattttaca--aagatttgatctctggtgtttcttaccttcctttattgtgtttccaaatcaaatgcagATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAG
                               ||  ||  | |     |  ||  |   |   ||| ||   | ||  || |||   |    | |||  || |  | | |||| ||||||||||| ||||||||||  || |||||||||||||| |||||||||||||||   || || ||||| || || ||||| |||| |||
gtaagcattcggtgtcaccaactttttagaatgctttattatatggtctcttccctttattgtttcattcatagtactttttaagctaacctcttg--ttacttattgaaatccagATATGTGATATGGTTGCTGTTGCCAAGATTATGAATGCCACTCTTGTTCTTCCTTCTCTTGATCATGAGTCCTTTTGGACAGACCTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgatctctggtgtttcttaccttcctttattgtgtttccaaatcaaatgcagATATGTGACATGGTTGCTGCAGCAAAGATTATGAATGCGACTCTTGTTCTTCCTCTACTCGACCATGAATCTTTCTGGACTGACCCGAG
                ttcttac  putative branch site (score: 2)
                                          aaatcaaat  TA-rich tract