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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattcatcatctctgttgtatgtgtgtttagcggaggtgttgatgatgatggattgtcgtttgttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG

Basic information

species Arabidopsis thaliana
transcript AT2G37660.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37660.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtttgtattcatca-------tctctgttgtatgtgtgtttagcggaggtgttgatgatgatggat--tgtcgtttgttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG
                 |  |||| ||||       | | | || |   | ||||  ||   ||| ||||      || ||  | |  |   |  | ||||| ||  |||||||||| ||||| ||||| ||||||||||| |||||||||||| || | || || ||  | || ||  | || ||||  || || |||
gtgagattttctttctgtcatattaatcaggttatgtatttattttcaatatgttc-gctttggtattgaatggcctgaatcatattatccatatttacagCAAAAACTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGAGGAACAGACCTAAACCATCCCTTGAACAGCTTGGGAAATGGGAATATCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076409|gb|DR372166.1|DR372166
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|124759379|gb|EH849509.1|EH849509
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGA
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGA
EST: gi|125212043|gb|EL226997.1|EL226997
EST:     TTGACTGGATTGGTCAGAAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGTATTGTTTTGGTTGGGTCGATGGGAGGA
genomic: TTGACTGGATTGGTCAG-AAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAG-ATTGTTTTGGTTGGGTCGATGGGAGGA
EST: gi|164015236|gb|ES207873.1|ES207873
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGG
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGG
EST: gi|163986862|gb|ES114616.1|ES114616
EST:     TTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: TTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|124847010|gb|EH931447.1|EH931447
EST:     CAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: CAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|47831378|gb|CK121062.1|CK121062
EST:     GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         TTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: GTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|125292958|gb|EL307043.1|EL307043
EST:     CAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: CAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|124959188|gb|EL033892.1|EL033892
EST:     AACAGGTTAGACTGGATTGGTCAGAAGAATCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: AACAGGTT-GACTGGATTGGTCAGAAGAATCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
EST: gi|125261050|gb|EL275135.1|EL275135
EST:     TCAGATAGACGCTG                         CTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA
genomic: TCAGATAGACGCTGgtttgtattc ... gttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgtgtgtttagcggaggtgttgatgatgatggattgtcgtttgttgtaacagCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTG
                    tgttgat  putative branch site (score: 4)