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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttcatactaacttatctcattggaataaattttcacttttcttgcctaacttttgcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTATCAGGATTTGTTGGCTCAAATAACTAACTCTGATGAAAACTCATCTGATG

Basic information

species Arabidopsis thaliana
transcript AT2G37290.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398838|gb|EG441430.1|EG441430
EST:     AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAG                         GTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
genomic: AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGgtaaagttca ... gcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
EST: gi|116401134|gb|EG443726.1|EG443726
EST:     AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAG                         GTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
genomic: AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGgtaaagttca ... gcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
EST: gi|116398843|gb|EG441435.1|EG441435
EST:     AACTTGAGGTACTTGTTCGTTTGAGAGTGCCAAAGGATCTTAGAGGAGAG                         GTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
genomic: AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGgtaaagttca ... gcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
EST: gi|116398833|gb|EG441425.1|EG441425
EST:     AACTTGTGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAG                         GTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
genomic: AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGgtaaagttca ... gcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
EST: gi|116398836|gb|EG441428.1|EG441428
EST:     AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAG                         GTTTGGCAAGCCTTCGTAGGTGTAAAAGCATGAAGAGTTGAGAGATACTAT
genomic: AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGgtaaagttca ... gcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
EST: gi|116401146|gb|EG443738.1|EG443738
EST:     AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAG                         GTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT
genomic: AACTTGAGGTACTTGTTCGTTTGGGAGTGCCAAAGGATCTTAGAGGAGAGgtaaagttca ... gcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttatctcattggaataaattttcacttttcttgcctaacttttgcatttacagGTTTGGCAAGCCTTCGTAGGTGTAAAAGCAAGAAGAGTTGAGAGATACTATCAGGATTTGTTGGCTCAAATAACTAACTCTGATGAAAACTCATCTGATG
                                        cttttgc  CT-rich tract
              aataaattttcacttt  TA-rich tract