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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacagaatgatctttggtttaaaaagattggccatttatacacaattgaagtcattgagtgatacctttgagatttttgtttagGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G37240.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467378|gb|EG509970.1|EG509970
EST:     ATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAG                         GATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGC
genomic: ATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAGgtaacagaat ... ttttgtttagGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGC
EST: gi|116467371|gb|EG509963.1|EG509963
EST:     ATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAG                         GATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGC
genomic: ATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGCAGAAAAGAAGgtaacagaat ... ttttgtttagGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccatttatacacaattgaagtcattgagtgatacctttgagatttttgtttagGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAGCATCGATCAG
                                            tttttgttt  CT-rich tract
                                           atttttgttta  TA-rich tract