1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttgtcaaatcaattgtctttgagtaaaataaacagaacaaggtgttggtcaattcatctgccattatggctcttctaattccacttcattgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG
species | Arabidopsis thaliana |
transcript | AT2G37020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGT TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATEST: gi|86081369|gb|DR377126.1|DR377126
genomic: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTgtatgtctct ... tgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGAT
EST: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGT TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTGEST: gi|116444079|gb|EG486671.1|EG486671
genomic: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTgtatgtctct ... tgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG
EST: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGT TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTGEST: gi|86086716|gb|DR382475.1|DR382475
genomic: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTgtatgtctct ... tgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG
EST: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGT TGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCNCTG
genomic: AGAAACTGGAACTCTTCTCGTGCATACCGAAGCTGAAGAAAAACTTGGGTgtatgtctct ... tgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG
ttggtcaattcatctgccattatggctcttctaattccacttcattgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG
ttctaat putative branch site (score: 2)
cttcatt putative PPT
ttctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtcaaatcaattgtctttgagtaaaataaacagaacaaggtgttggtcaattcatctgccattatggctcttctaattccacttcattgtacttcagTGAACAGTTTGGAGTTTGGATTGGAGACAGAAGATTATCTCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - aaatcaa
- - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - -cagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttct