1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatcaccttgacgttcttcttctctatgttgttaacctgttatgtgtgtgaaccttctctttgtgttgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAG
species | Arabidopsis thaliana |
transcript | AT2G36960.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG AATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAGGEST: gi|86069766|gb|DR365523.1|DR365523
genomic: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAGG
EST: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG AATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGEST: gi|86069770|gb|DR365527.1|DR365527
genomic: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGG
EST: CACATCAAGAAGAGGAAAGTTTCTTAACTGCTCTTCGTCAAGTTGGAAAG AATTTTGAGAAGATAACTTCTCEST: gi|86069767|gb|DR365524.1|DR365524
genomic: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTC
EST: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG AATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGAEST: gi|86069769|gb|DR365526.1|DR365526
genomic: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGA
EST: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG AATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAGGTCEST: gi|86069768|gb|DR365525.1|DR365525
genomic: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAGGTC
EST: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAG AATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAGEST: gi|86069771|gb|DR365528.1|DR365528
genomic: CACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGGAAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAG
EST: ACATCAAGAAGAGGAAAGTTTCT--ACTGCTCTTCGTCAAGTTGGGAAAG AATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAG
genomic: ACATCAAGAAGAGGAAAGTTTCTTCACTGCTCTTCGTCAAGTTGG-AAAGgtatcacctt ... tgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAG
ctctatgttgttaacctgttatgtgtgtgaaccttctctttgtgttgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAG
tgttaac putative branch site (score: 2)
ccttctctttgtgtt putative PPT
ttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaccttgacgttcttcttctctatgttgttaacctgttatgtgtgtgaaccttctctttgtgttgttttgtagAATTTTGAGAAGATAACTTCTCGTGTTCAGAGCAAAAACAAGGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA