Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcgttgttttttccttccatcttctgcaacctataagcgtaaagtctcagttttgtttcatgttgtgtagGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAACAGGTAACCACCAGGTTGGTTTCCTTACCAATCGGCATGTCGCAGTTG

Basic information

species Arabidopsis thaliana
transcript AT2G35155.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35155.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G34800.1 (Glycine max), 3'ss of exon 3
--------------gtacatcgttgttttttccttccatcttctgcaacc---tataagcgtaaagtctcagttttgtttcatgttg--------tgtagGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAACAGGTAACCACCAGGTTGGTTTCCTTACCAATCGGCATGTCGCAGTTG
                |  |  |  ||| | |    |||    || | |    |||||   |  | |||   |||  |||    ||         || |||||||||||||||| ||||||||||||||||| ||||| || | |||| ||||||| || |   | ||||| || || || ||||| ||||| || ||||
catttttcatttttccaagtattgatttctgctcctcataacgtgaaccttgatataatgctggaatctatctttcctttataatttcttctccttgaagGTTGCAAGCCAAGAGACATATGGAACCTTGGGTGCTATTGTCAGAAGCCGAACAGGAAATCGAGAAGTTGGCTTTCTAACAAATCGACATGTAGCTGTTG

upper sequence: AT2G35155.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G02500.1 (Glycine max), 3'ss of exon 2
--------------gtacatcgttgttttttccttccatcttctgcaaccta---taagcgtaaagtctcagttttgtttcatgttgtgt---------agGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAACAGGTAACCACCAGGTTGGTTTCCTTACCAATCGGCATGTCGCAGTTG
                |  |  |  ||| | |    |||  | || | | |    |||   |  | ||| |  |||  |||||  | | |         ||||||| |||||||| ||||||||||||||||| ||||| || | |||| || |||| ||     | |||||||| || || ||||| ||||| || ||||
catttttagtttttccaagtattgatttctgctcctcattatgtgaaccttgatctaatgctggaatct-atctttccttcataatttcttctccttgaagGTTGCTAGCCAAGAGACATATGGAACCTTGGGTGCTATTGTCAGAAGCCGATCAGGAAATAGAGAAGTTGGTTTTCTAACAAATCGACATGTAGCTGTTG

upper sequence: AT2G35155.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv01s0011g01870.t01 (Vitis vinifera), 3'ss of exon 4
------------------gtacatcgttgttttttccttccatcttctgcaacct-ataagcg-----taaagtctcagttttgtttcatgtt-gtgtagGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAACAGGTAACCACCAGGTTGGTTTCCTTACCAATCGGCATGTCGCAGTTG
                    |      |||||   | ||||||    |||| | | || |  |     | || |  |    ||| ||| ||||  || |||||||||||||||| ||||| ||||||||||| ||||| || |||||| ||||||| ||||| |||||||||||||| || |||||||| || |||||||
tacacctgaaccttgtcaacaggaatctgtttacacattccattgcttgcatcttcatcattgctttttcaaattgcccaattgcttcttgttcatgcagGTTGCAAGCCAAGAGACATACGGAACCTTGGGTGCTATTGTAAAAAGCCGAACAGGAAACCAACAGGTTGGTTTCCTCACAAATCGGCACGTGGCAGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116420548|gb|EG463140.1|EG463140
EST:     TTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTGGTTCTCAG                         GTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGA
genomic: TTGTAGATGGTTTGAGAGGAAGTGATCCCTGCATTGGCTCTGGTTCTCAGgtacatcgtt ... tgttgtgtagGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatcttctgcaacctataagcgtaaagtctcagttttgtttcatgttgtgtagGTTGCAAGCCAAGAAACATATGGAACCTTGGGAGCTATAGTGAAAAGCAGAACAGGTAACCACCAGGTTGGTTTCCTTACCAATCGGCATGTCGCAGTTG
                                   ttttgttt  TA-rich tract