1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttcgtaatgattctctgtttccatttgatatgatgcaaaatgcctcatgagcttactactgatacccatttggtttaattggattttgttatgatatagGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCGAAAGATGTATATGAGTTTACGGAATGTCCAAACTGTTACG
species | Arabidopsis thaliana |
transcript | AT2G34860.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGTGCTGTTCTTT GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGEST: gi|124978112|gb|EL051341.1|EL051341
genomic: GAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGTGCTGTTCTTTgtgagtgaca ... tatgatatagGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTG
EST: GAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGNGCTGTTCTTT GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAAACCGAAAACGTEST: gi|86073323|gb|DR369080.1|DR369080
genomic: GAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGTGCTGTTCTTTgtgagtgaca ... tatgatatagGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAA-CCGAAAACGT
EST: GAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGTGCTGTTCTTT GTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGANNNCGTG
genomic: GAAACCAGGAGGTTCATGTCGTAACTGCCAGGGCAGTGGTGCTGTTCTTTgtgagtgaca ... tatgatatagGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTG
tcatgagcttactactgatacccatttggtttaattggattttgttatgatatagGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCGAAAGATGTATATGAGTTTACGGAATGTCCAAACTGTTACG
ttttgtt CT-rich tract
attttgttatgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtaatgattctctgtttccatttgatatgatgcaaaatgcctcatgagcttactactgatacccatttggtttaattggattttgttatgatatagGTGATATGTGTGGTGGTACAGGAAAATGGAAAGCTCTCAACCGAAAACGTGCGAAAGATGTATATGAGTTTACGGAATGTCCAAACTGTTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG