1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtaccatttaattcatgttgagcttcattacaacagttatgtaactcggctgaagagttcattatgatcttatataaatggtcagttttattgtggcagTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAGGAACTCAAGCGGCTCCTTACCTGACTACAACCTTCTACACTGAGCTTTC
species | Arabidopsis thaliana |
transcript | AT2G34050.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAG TTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAGEST: gi|86077967|gb|DR373724.1|DR373724
genomic: TGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAGgttctaactt ... attgtggcagTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAG
EST: TGTCATTCCATCGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAG TTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAGEST: gi|124861111|gb|EH945548.1|EH945548
genomic: TGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAGgttctaactt ... attgtggcagTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAG
EST: TGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAG TTGAAGCGCCTEST: gi|164210134|gb|ES170216.1|ES170216
genomic: TGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAGgttctaactt ... attgtggcagTTGAAGCGCCT
EST: GAGAGGAAATGGTTACATTACAATGTTTGCTCAAG TTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAG
genomic: GAGAGGAAATGGTTACATAACAATGTTTGCTCAAGgttctaactt ... attgtggcagTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAG
ctcggctgaagagttcattatgatcttatataaatggtcagttttattgtggcagTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAGGAACTCAAGCGGCTCCTTACCTGACTACAACCTTCTACACTGAGCTTTC
ttttatt CT-rich tract
ttcattatgatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaccatttaattcatgttgagcttcattacaacagttatgtaactcggctgaagagttcattatgatcttatataaatggtcagttttattgtggcagTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAGGAACTCAAGCGGCTCCTTACCTGACTACAACCTTCTACACTGAGCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - acaacag