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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaccttgaaccagttcaaagctagcttcttactggattatactaaaaacgtttggtttgagttaaacatgtgtttctttttgcgtgtagGTACGTGTTCAAGCCATCCGTGGGCTCCCGCTGTTTTGTAAGGATACGCCAGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAG

Basic information

species Arabidopsis thaliana
transcript AT2G34040.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475722|gb|EG518314.1|EG518314
EST:     CTGAGGCTTTCGATGCGCATATGGACTGTATCGATGATGGAGATCTTGGG                         GTACGTGTTCAAGCCATCCGTGGGCTCCCGCTG
genomic: CTGAGGCTTTCGATGCGCATATGGACTGTATCGATGATGGAGATCTTGGGgtatgtacct ... ttgcgtgtagGTACGTGTTCAAGCCATCCGTGGGCTCCCGCTG
EST: gi|86038473|gb|DR334228.1|DR334228
EST:     CTGAGGCTTTCGATGCGCATATGGACTGTATCGATGATGGAGATCTTGGG                         GTACGTGTTCAAGCCATCCGTGGGCTCCCGCTGTTTTGTAAGGATACGCCA
genomic: CTGAGGCTTTCGATGCGCATATGGACTGTATCGATGATGGAGATCTTGGGgtatgtacct ... ttgcgtgtagGTACGTGTTCAAGCCATCCGTGGGCTCCCGCTGTTTTGTAAGGATACGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattatactaaaaacgtttggtttgagttaaacatgtgtttctttttgcgtgtagGTACGTGTTCAAGCCATCCGTGGGCTCCCGCTGTTTTGTAAGGATACGCCAGATATTTTATCTAAGATTGTTGATGTTCTTGTTCAACTCTTGAATACAG
     tactaaa  putative branch site (score: 1)
                                    tgtttcttttt  putative PPT
     tactaaaaa  TA-rich tract