1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaataataataatatgatgcttttggtttgaacttgcaatctgattctgaaaaaagcttgtgtgatgttgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATAACCATTGCCATTGCCATCTTAGTG
species | Arabidopsis thaliana |
transcript | AT2G32560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCCATATG GATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATEST: gi|125250490|gb|EL264575.1|EL264575
genomic: TCGAAATCCAGTGGAGAAGGAACAAAGAGTT-CCCATATGgtaaataata ... tgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCAT
EST: TGGAGATCACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATG GATGGTGGTATGGTCTTGTTCGCCACTTGGAAEST: gi|86085529|gb|DR381288.1|DR381288
genomic: TGGAGATCACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGgtaaataata ... tgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAA
EST: TGGAGATCACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATG GATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATAEST: gi|86074300|gb|DR370057.1|DR370057
genomic: TGGAGATCACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGgtaaataata ... tgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATA
EST: TGGAGATCACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATG GATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATA
genomic: TGGAGATCACATCGAAATCCAGTGGAGAAGGAACAAAGAGTTCCCATATGgtaaataata ... tgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATA
tggtttgaacttgcaatctgattctgaaaaaagcttgtgtgatgttgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATAACCATTGCCATTGCCATCTTAGTG
atctgat putative branch site (score: 4)
tgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataataataatatgatgcttttggtttgaacttgcaatctgattctgaaaaaagcttgtgtgatgttgttgtgtagGATGGTGGTATGGTCTTGTTCGCCACTTGGAATCCTGTGATGGAGATCATAACCATTGCCATTGCCATCTTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA