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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatatctcttaagctgtaatgaactattttaaaacttctcgggtttgaaaacgttcttgtttaacttcagGACATTGGATAAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGCTCAGGAGTCTTTAGTAAACGGTGCTCCTATATCTAATGATATG

Basic information

species Arabidopsis thaliana
transcript AT2G32430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA12G10520.1 (Glycine max), 3'ss of exon 3
----------------------------gtgagatatctcttaagct-gtaatgaactattttaaaacttctcgggtttgaaaacgttcttgtttaacttcagGACATTGGATAAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGCTCAGGAGTCTTTAGTAAACGGTGCTCCTATATCTAATGATATG
                               | |   | |||   || || ||    |||| |    | | ||    ||  |  ||    | || ||  | || |||||||| ||| ||||||||| |||||||||||| || ||||| |||||  |  ||||||||||| ||  ||  ||||||||||| ||  ||||||| 
ttctagaagtgcttcgggataaactcacccaaaaaggcccttggtcttgttattttttattattttgcatgtcaaactt--atgcgagagtattgaatgt-agAACATTGGACAAGGCTATTTCAAACTTAGAGATGGAATTGGCTGCTGCAAGGGCAACTCAGGAGTCTCTACGAAGTGGTGCTCCTATTTCAGATGATATA

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA12G31980.1 (Glycine max), 3'ss of exon 3
-------------gtgagatatctcttaagctgtaat---gaactattttaaaacttctcgggtttgaaaacgttcttgttta-acttcagGACATTGGATAAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGCTCAGGAGTCTTTAGTAAACGGTGCTCCTATATCTAATGATATG
              |     ||   ||  | ||||||       ||||||   | ||    | |    |   ||   ||  |  | |  || ||  |||| || |||||||||| ||| |||||||| |||||||| |||| | | |||||||||||| ||  ||  ||||||||  || |  | ||||| 
gtaagttatacttatataccattggttgtgttgtaattttattttatttttgtattttcatgctaaacatgtgtaactgcatggaatgtagAACCCTGGACAAAACTATTTCAAACTTGGAGATGGAATTAGCTGCTGCAAAAGCAGCTCAGGAGTCTATACGAAGTGGTGCTCCGGTAGCAGAAGATATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgaactattttaaaacttctcgggtttgaaaacgttcttgtttaacttcagGACATTGGATAAGACTATTTCAAGCTTAGAGATGGAGTTAGCTGCAGCAAGATCGGCTCAGGAGTCTTTAGTAAACGGTGCTCCTATATCTAATGATATG
                                           gtttaac  putative branch site (score: 3)
                                      ttcttgttt  CT-rich tract
      aactattttaaaactt  TA-rich tract