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gtatgcattgcattcactccctttcttagtaaaacttgttggtcttgtttaatttgtttagtttctcatccttttttttcttgcttcgtttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTGCAAATTGTGGTGCTACAG
species | Arabidopsis thaliana |
transcript | AT2G31060.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAG TCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTGEST: gi|116457297|gb|EG499889.1|EG499889
genomic: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattg ... ttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
EST: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAG TCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTGEST: gi|116457298|gb|EG499890.1|EG499890
genomic: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattg ... ttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
EST: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAG TCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
genomic: GTATGGACTACGCCCAATCCTTCTCTTAAACAAGGTAGATCGACCTTCAGgtatgcattg ... ttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTG
ttgtttaatttgtttagtttctcatccttttttttcttgcttcgtttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTGCAAATTGTGGTGCTACAG
gtttaat putative branch site (score: 4)
tttctcatcctttttt putative PPT
taatttgtttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcattgcattcactccctttcttagtaaaacttgttggtcttgtttaatttgtttagtttctcatccttttttttcttgcttcgtttatttacagTCACGGAAGAGAGGTGTGATGAAGTGGAGAGTTTGGTGTTTGATCTTTTTGCAAATTGTGGTGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA