1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtttcctacagttgatttgatcatttctcatgttaacctcaacggtctactttgtaagtgtggccaagcttcttttgcttcccaaaaataacatggtttatgttttctcttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTACTATCATCCAGAAACCAAGGGCTTGGATTTCTCAGCATTGATGGATGAT
species | Arabidopsis thaliana |
transcript | AT2G30970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAA CCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTAEST: gi|116454920|gb|EG497512.1|EG497512
genomic: CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAAgtgagtttcc ... ttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA
EST: CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAA CCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA
genomic: CGTTTTTCTCCTGGTTCACAGATCTACATTCCTGTTCCAACCTGGTCCAAgtgagtttcc ... ttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTA
caagcttcttttgcttcccaaaaataacatggtttatgttttctcttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTACTATCATCCAGAAACCAAGGGCTTGGATTTCTCAGCATTGATGGATGAT
aaataac putative branch site (score: 2)
tttatgttttctctt putative PPT
aaaaataacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcctacagttgatttgatcatttctcatgttaacctcaacggtctactttgtaagtgtggccaagcttcttttgcttcccaaaaataacatggtttatgttttctcttatgaatagCCACCACAACATCTGGAAAGATGCACAAGTCCCTCAAAAGACATATCATTACTATCATCCAGAAACCAAGGGCTTGGATTTCTCAGCATTGATGGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA