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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagagaaggtctttgtgtgttcattatatcacttggcgttaaacataaggacaagccattactaccttctcataactgcttatttgttagtagctagattgtttattagttgagttttctttgttttggaaaagGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGACATTAGTGAAAACTTCATTAAAGAAGTACCTGCCAAAATCAGCTCCTTTG

Basic information

species Arabidopsis thaliana
transcript AT2G30105.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067168|gb|DR362925.1|DR362925
EST:     ATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAAGCCAATTTGAAG                         GAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGAC
genomic: ATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAAGCCAATTTGAAGgtatatagag ... tttggaaaagGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGAC
EST: gi|125281618|gb|EL295703.1|EL295703
EST:     GCTTTAGCTCAAGCCAATTTGAAG                         GAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGAC
genomic: GCTTTAGCTCAAGCCAATTTGAAGgtatatagag ... tttggaaaagGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGAC
EST: gi|86067167|gb|DR362924.1|DR362924
EST:     ATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAAGCCAATTTGAAG                         GAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGAC
genomic: ATCGATGGAAAGCCACAGGAGTTATTGCTTTAGCTCAAGCCAATTTGAAGgtatatagag ... tttggaaaagGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgttagtagctagattgtttattagttgagttttctttgttttggaaaagGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGACATTAGTGAAAACTTCATTAAAGAAGTACCTGCCAAAATCAGCTCCTTTG
                                   ttttctttgtttt  CT-rich tract
               tagattgtttatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatatagagaaggtctttgtgtgttcattatatcacttggcgttaaacataaggacaagccattactaccttctcataactgcttatttgttagtagctagattgtttattagttgagttttctttgttttggaaaagGAAATACCTGAAGAAGTGTGGGACTGTGGATCTGGAGTCAGAGTACTTGACATTAGTGAAAACTTCATTAAAGAAGTACCTGCCAAAATCAGCTCCTTTG

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