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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctgctacttcataatttgagcattccatttgattcatcatgtgtgtataccaaccaaagcatatgtcttgtatagCCAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTTCCTCCACAGACCATTCGGTTTTCTTCAAAACTGGAAAGTATA

Basic information

species Arabidopsis thaliana
transcript AT2G29720.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037180|gb|DR332935.1|DR332935
EST:     GAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGACAATGATCAAAG                         CCAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAG
genomic: GAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGACAATGATCAAAGgtacctgcta ... tcttgtatagCCAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattccatttgattcatcatgtgtgtataccaaccaaagcatatgtcttgtatagCCAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTTCCTCCACAGACCATTCGGTTTTCTTCAAAACTGGAAAGTATA
      atttgat  putative branch site (score: 5)
      atttgatt  TA-rich tract