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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattactactctcttcccttagtctctatagatagtttctttatgatatatatctctgagaagacttgtgatctctgcagTTATCATGCCTCCTTCCGCTCTCGATCGTCTTG

Basic information

species Arabidopsis thaliana
transcript AT2G29070.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072862|gb|DR368619.1|DR368619
EST:     GCACATCTTGAGAAGGGTGACAAAA                         TTATCATGCCTCCTTCCGCTCTCGATCGTCTTG
genomic: GCACATCTTGAGAAGGGTGACAAAAgtaaattact ... atctctgcagTTATCATGCCTCCTTCCGCTCTCGATCGTCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatagatagtttctttatgatatatatctctgagaagacttgtgatctctgcagTTATCATGCCTCCTTCCGCTCTCGATCGTCTTG
                                              tctctgc  CT-rich tract
      atagtttctttatgat  TA-rich tract