1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgacgaagatagtttagatatttttttgtgttatcagtcaattctcagttttctgattttgaagttaacagttttcttgttttacaatctggttttgtagAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTA
species | Arabidopsis thaliana |
transcript | AT2G27970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGGAAGTTGCTAAGCTTTTACCGAAGAATCGTATTCTTTCGGAA AGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACEST: gi|124905009|gb|EH979089.1|EH979089
genomic: CCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTATTCTTTCGGAAgtaagttaaa ... ggttttgtagAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTAC
EST: TTTACCTAAGAATCGTATTCTTTCGGAA AGTGAGTGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACEST: gi|86057505|gb|DR353262.1|DR353262
genomic: TTTACCTAAGAATCGTATTCTTTCGGAAgtaagttaaa ... ggttttgtagAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTAC
EST: TTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTATTCTTTCGGAA AGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTAC
genomic: TTCCTCCGGAAGTTGCTAAGCTTTTACCTAAGAATCGTATTCTTTCGGAAgtaagttaaa ... ggttttgtagAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTAC
cagttttctgattttgaagttaacagttttcttgttttacaatctggttttgtagAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTA
agttaac putative branch site (score: 3)
ttttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacgaagatagtttagatatttttttgtgttatcagtcaattctcagttttctgattttgaagttaacagttttcttgttttacaatctggttttgtagAGTGAATGGAGAGCCATCGGAGTGCAGCAAAGTCGTGGATGGGTTCATTACGCGATTCATCGTCCTGAGCCACATATCATGCTCTTTAGGAGGCCTCTTA
- - gaagata
- - - - - - - - - - - - - - - - - - - - -ttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - gattttg