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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttctgtatgttttcatcgattcttgcggttcttaatttgtatactaagcatcatcggtttgtttccctcattttgttctgcagGTGTGGGATGATTGTGAAG

Basic information

species Arabidopsis thaliana
transcript AT2G27480.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27480.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv06s0080g00450.t01 (Vitis vinifera), 3'ss of exon 3
gtaagttttctgta--tgttttcatcgattcttgcggttcttaatttgtatactaagcatcatcggtttgtttccctcattttgttc----tgcagGTGTGGGATGATTGTGAAG
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gtaagtcttgtcttattgaacacattggatgcaaattttttagatttagaaagt--gtcttaacagttctaatgttttgttttgttggatgtgcagGTGTGGGATGATTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19743339|gb|AU228692.1|AU228692
EST:     GATGATGGGACTGGCAAAACTGTTGACCTATGTTTCGACAGCTTCCTCGA                         GTGTGGGATGATTGTGAAG
genomic: GATGATGGGACTGGCAAAACTGTTGACCTATGTTTCGACAGCTTCCTCGAgtaagttttc ... tgttctgcagGTGTGGGATGATTGTGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttaatttgtatactaagcatcatcggtttgtttccctcattttgttctgcagGTGTGGGATGATTGTGAAG
 tcttaat  putative branch site (score: 3)
                             tttgtttccctcattt  putative PPT
     aatttgtatactaa  TA-rich tract