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...aaagaagattcattgcctctactattctgtctatccgtagtatgtgtgaaagtctgtttgaagttttgttaaaccattcaatggcctattttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAATGATGGAAGCCTATACAGAGATGCTTACATATATCAAG
species | Arabidopsis thaliana |
transcript | AT2G26990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTG GGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAEST: gi|86049785|gb|DR345540.1|DR345540
genomic: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGgtaagaccgt ... ttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAA
EST: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTG GGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAEST: gi|86049783|gb|DR345538.1|DR345538
genomic: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGgtaagaccgt ... ttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAA
EST: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTG GGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAEST: gi|152038205|gb|BP811111.2|BP811111
genomic: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGgtaagaccgt ... ttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAA
EST: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTG GGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAA
genomic: CTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGAGAAAGCTGACTGgtaagaccgt ... ttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAA
gtgaaagtctgtttgaagttttgttaaaccattcaatggcctattttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAATGATGGAAGCCTATACAGAGATGCTTACATATATCAAG
cctattttcttgtc CT-rich tract
ttttgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaagattcattgcctctactattctgtctatccgtagtatgtgtgaaagtctgtttgaagttttgttaaaccattcaatggcctattttcttgtcagGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCTAGGTAAATACAAAGAAATGATGGAAGCCTATACAGAGATGCTTACATATATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
aaagaag
- - - - - - - -cctctac
- - - - - - - - - - - - - - - ctatccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccat