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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtctgaactttttgttgacttgttattatagctcatgacatatttatagtttatgacaacatggataattttttttgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG

Basic information

species Arabidopsis thaliana
transcript AT2G25910.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035177|gb|DR330930.1|DR330930
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035184|gb|DR330937.1|DR330937
EST:     GTCTAATGTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: GTCTAAT-TACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035180|gb|DR330933.1|DR330933
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         ACTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035183|gb|DR330936.1|DR330936
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTTACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035178|gb|DR330931.1|DR330931
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035173|gb|DR330926.1|DR330926
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATT
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATT
EST: gi|125068148|gb|EL134393.1|EL134393
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTG
EST: gi|86035181|gb|DR330934.1|DR330934
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035176|gb|DR330929.1|DR330929
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035179|gb|DR330932.1|DR330932
EST:     AAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035186|gb|DR330939.1|DR330939
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035185|gb|DR330938.1|DR330938
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         ACTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035174|gb|DR330927.1|DR330927
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
EST: gi|86035182|gb|DR330935.1|DR330935
EST:     AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAG                         GCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
genomic: AGTCTAATTACATCACGAAAGTTATTCACGATTGCAAGCGTGACAGTGAGgtgtctgaac ... tgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcatgacatatttatagtttatgacaacatggataattttttttgtactacagGCTCTATACTTCCAGTTTGGGATAAGATTGCACAATGTTGTGGACACTCAG
                                      ttttttttgt  CT-rich tract
                                  ataattttttttgtac  TA-rich tract