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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgatctctcttgtctctggttattactatcgggtcagtctctcaaactctggaattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT

Basic information

species Arabidopsis thaliana
transcript AT2G24320.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451180|gb|EG493772.1|EG493772
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCCTACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451170|gb|EG493762.1|EG493762
EST:     GAGTTCTGTATCCTGTCAAAATGACATTTTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: GAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451184|gb|EG493776.1|EG493776
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451186|gb|EG493778.1|EG493778
EST:     TCAGAGTTCTGTATCCTGTCAAAATGGCATTCCGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451191|gb|EG493783.1|EG493783
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451174|gb|EG493766.1|EG493766
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451188|gb|EG493780.1|EG493780
EST:     TCAGAGTTCTGTATCCTGTCAAAATGGCATTCCGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451178|gb|EG493770.1|EG493770
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451183|gb|EG493775.1|EG493775
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCCTACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451175|gb|EG493767.1|EG493767
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451173|gb|EG493765.1|EG493765
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451185|gb|EG493777.1|EG493777
EST:     TCAGAGTTCTGTATCCTGTCAAAATGGCATTCCGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451181|gb|EG493773.1|EG493773
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCCTACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451189|gb|EG493781.1|EG493781
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451172|gb|EG493764.1|EG493764
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451179|gb|EG493771.1|EG493771
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCCTACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451177|gb|EG493769.1|EG493769
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451176|gb|EG493768.1|EG493768
EST:     TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
EST: gi|116451187|gb|EG493779.1|EG493779
EST:     TCAGAGTTCTGTATCCTGTCAAAATGGCATTCCGGTTCGATATGTACAAA                         AACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
genomic: TCAGAGTTCTGTATCCTGTCAAAATGACATTCTGGTTCGATATGTACAAAgtaagcttga ... aattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtctctggttattactatcgggtcagtctctcaaactctggaattttgcagAACATTGACAAGATACGCCATGTAACATGCCCTGTTCTTGTCATACAT
            ttattactat  TA-rich tract