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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctctcgattctgtgtccctttgtcgttaatcttctgctgctcttgactgatgttttactttggttttgggagcagGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAGTGGGCAGATCTTCTTAGCTCGTTATATTCATTGGTTATGATCTTTTTGTACTAA

Basic information

species Arabidopsis thaliana
transcript AT2G23930.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164152715|gb|ES056777.1|ES056777
EST:     GTAACGACAAAACCGACATCGGGATGGTG                         GTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTCGAACCAG
genomic: GTAACGACAAAACCGACATCGGGATGGTGgtaagtctct ... ttgggagcagGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAG
EST: gi|164150748|gb|ES132647.1|ES132647
EST:     ATAACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTG                         GTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAG
genomic: ATAACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTGgtaagtctct ... ttgggagcagGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAG
EST: gi|164139665|gb|ES091626.1|ES091626
EST:     GAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTG                         GTGATTAGAGGAAACAGACATTGTCACTGTTGAAGCTC
genomic: GAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTGgtaagtctct ... ttgggagcagGTGATTAGAGGAAACAG-CATTGTCACTGTTGAAGCTC
EST: gi|47830339|gb|CK120023.1|CK120023
EST:     ATAACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTG                         GTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAGTGGGC
genomic: ATAACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTGgtaagtctct ... ttgggagcagGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAGTGGGC
EST: gi|164087913|gb|ES001564.1|ES001564
EST:     AACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTG                         GTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCA-TGGGC
genomic: AACACTGTTGAGGTGAACGGTAACGACAAAACCGACATCGGGATGGTGgtaagtctct ... ttgggagcagGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAGTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgttaatcttctgctgctcttgactgatgttttactttggttttgggagcagGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCAGTGGGCAGATCTTCTTAGCTCGTTATATTCATTGGTTATGATCTTTTTGTACTAA
                        gactgat  putative branch site (score: 3)
                                ttttacttt  TA-rich tract