Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagtctctttgctgtatgttgtactgctcgttagcgtaagccttaaaatctacacaactgaattactttctcgtttagGCAAAGATCCTTTATAAGGACGTACCATTCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATCTCGGTATGCTTC

Basic information

species Arabidopsis thaliana
transcript AT2G23460.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 8
-----------gtatgagtctctttgctgtatgttgtac-tgctcgttagcgtaagccttaaaatctacacaact---gaat--tactttctcgt-ttagGCAAAGATCCTTTATAAGGACGTACCATTCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATCTCGGTATGCTTC
             ||     |||||     |   || |  |  | | |   | |||||   ||||| |   |  |   ||||  ||  | ||  | | |||| ||||| ||||| ||   |   || || |  |||||||| |||||||| |||||| |||  || |||||||||||||||| |||||| || || ||  
aatagttagctacattgtcttctttttgtcaacatgcatgttgttgctgaagaaagccaagaaatcaatgtatttatagaattgtaaatgcttatgtcagGCCAAGATTCTTTACAAAAGCACCCCCTTTTCAGAAGATGAACGTGAAAATATAAAGTTGACCATTCAGACCAATGTGTATGCTTATCTTGGCATACTCT

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 5
-----------gtatgagtctctttgctg-----tatgttgtactgctcgttagcgtaagccttaaaatctacaca---actgaattactttctcg-tttagGCAAAGATCCTTTATAAGGACGTACCATTCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATCTCGGTATGCTTC
            | |     |  | || |      ||||| |||   | |||    |   | |  | | |     |   | | ||||  || || | |  |||| ||||| |||||||| | |   || ||||  ||||||||||||||||| |||||| |||  || |||| |||||||||||| ||||| ||||| || |
tatatctgttactgtagacatggtggcaggttaacatgtt-tacaatttgttgat-tctacttagagaccagtgtatttattaaatttattgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124892497|gb|EH971399.1|EH971399
EST:     TTCTTTTGGTTGGAAACAGTGGTTCTGGAACTAGCACAATATTCAAGCAG                         GCAAAGATCCTTTATAAGGACGTACCATT
genomic: TTCTTTTGGTTGGAAACAGTGGTTCTGGAACTAGCACAATATTCAAGCAGgtatgagtct ... tctcgtttagGCAAAGATCCTTTATAAGGACGTACCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctcgttagcgtaagccttaaaatctacacaactgaattactttctcgtttagGCAAAGATCCTTTATAAGGACGTACCATTCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATCTCGGTATGCTTC
                                       ttactttctcgttt  CT-rich tract
                   ttaaaatcta  TA-rich tract