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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttcaagatttagatattttttgctttcttgataagtctttaaaccataacttttttttttcttgacagGTCATGGCTCGTTCTTCCCCAATGGACAAGCATACACTGGTGAAGCAGTTGAGGACTACTTTTGATGAAGTTGTTGCTGTGACTGGCGACGGGACAAACG

Basic information

species Arabidopsis thaliana
transcript AT2G22950.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22950.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os03g10640.1 (Oryza sativa), 3'ss of exon 3
-----------gtaacttttcaagatttagatattttttgctttcttgataagtctttaaaccataacttttttttttct-tgacagGTCATGGCTCGTTCTTCCCCAATGGACAAGCATACACTGGTGAAGCAGTTGAGGACTACTTTTGATGAAGTTGTTGCTGTGACTGGCGACGGGACAAACG
           ||  |||||   | |  || |    |    ||||| |||   || ||     ||   || |  |||  | |  ||||| |||||| | ||||| ||| | |||||||| ||  ||||||||||  |  |||| |||||||||||||||||||| || ||||| || || ||||| |
gtaaagttttcgttgcttttgctggtc-agtttaactgaattttctggatt--tcatttgctgatgtgttctggtttcatgtatcagGTGATGGCTAGATCTTCACCACTTGACAAGCACACCTTGGTGAAGCATCTCCGGACCACTTTTGATGAAGTTGTTGCGGTTACTGGTGATGGCACAAATG

upper sequence: AT2G22950.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------gtaacttttcaagatttagatattt------tttgctttcttgataagtctttaaaccataacttttttttttcttgacagGTCATGGCTCGTTCTTCCCCAATGGACAAGCATACACTGGTGAAGCAGTTGAGGACTACTTTTGATGAAGTTGTTGCTGTGACTGGCGACGGGACAAACG
                         | | | |  | | |   ||| |       |  |  || || ||  |   |   |  | || |||||||   ||  | |||| |||||||| ||||| ||  |||||||||||||||||||||| || || || || || |||| |||||||||||||||||| || || || ||||| |
gtccttcctacatctttatcttcagagcatgttgaaactagaatactaaagtagtaagaattgttcatctgatctgtgaatacaa-tttttttcccctcaatagGTAATGGCTCGATCTTCACCTTTGGACAAGCATACACTGGTGAAACACTTAAGAACCACATTTGGTGAAGTTGTTGCTGTGACCGGTGATGGAACAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttttgctttcttgataagtctttaaaccataacttttttttttcttgacagGTCATGGCTCGTTCTTCCCCAATGGACAAGCATACACTGGTGAAGCAGTTGAGGACTACTTTTGATGAAGTTGTTGCTGTGACTGGCGACGGGACAAACG
                              ccataac  putative branch site (score: 3)
                                 taacttttttttttct  CT-rich tract
                        tttaaaccataacttt  TA-rich tract