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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggctcttctctgtgcttgctttcatatatgattttaaattgttaagggaatctcaaagttttcagtttctaactcattcgttgcattactttacagTTCCAAGGACATCACAAGATTTTATTAAGTGTGAGAATTGTGCTACCGAAATCGAGATTTCTCCTACTCGG

Basic information

species Arabidopsis thaliana
transcript AT2G22610.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476789|gb|EG519381.1|EG519381
EST:     AAGTCCAGTGGTTTGTGGGATTTGTCTTAGGAAAGCGCCACAGGTTTCAG                         TTCCAAGGACATCACAAGATTTTATTAAGTGTGAGAATTGTGCTACCGAAA
genomic: AAGTCCAGTGGTTTGTGGGATTTGTCTTAGGAAAGCGCCACAGGTTTCAGgtaatggctc ... tactttacagTTCCAAGGACATCACAAGATTTTATTAAGTGTGAGAATTGTGCTACCGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagggaatctcaaagttttcagtttctaactcattcgttgcattactttacagTTCCAAGGACATCACAAGATTTTATTAAGTGTGAGAATTGTGCTACCGAAATCGAGATTTCTCCTACTCGG
                         ttctaac  putative branch site (score: 1)
                                            ttacttt  putative PPT
                                           attacttta  TA-rich tract