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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgatatcataagccaacattacaatttctctgttttttcatttgatgagattgttttgaagatgttatttttttctttttcttgtgaattttttcagGCAAGTTTCTATTGAGGAAGGAGATAGCAAAGGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATTCAATATTAAGCCTTTGTTT

Basic information

species Arabidopsis thaliana
transcript AT2G22290.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22290.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 3'ss of exon 4
gtatttgatatcataagccaacattacaatttctctgttttttcatttgatgagattgttttgaagatgttatttttttctttttcttgtgaattttttcagGCAAGTTTCTATTGAGGAAGGAGATAGCAAAGGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATTCAATATTAAGCCTTTGTTT
 ||  | ||||     ||||||  ||   ||    | ||   | ||||       |  |||   | |  ||    |  | ||||| | || |  |    ||||||||| || || |||||||| |||| ||||  |||||| |  ||||| |||||||| || || || || ||||||||||||||||| |||         
ataactaatattgatggccaaccatagttttggatttttcccttatttttgtttctattttcagaaaaattcagataatgtttttttggtaa--tcaaacagGCAAGTGTCAATAGAGGAAGGTGATACCAAATCTCGTGATTTTGGAGTCATGTTCATAGAAACCAGTGCTAAAGCAGGATTCAATATCAAG---------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgagattgttttgaagatgttatttttttctttttcttgtgaattttttcagGCAAGTTTCTATTGAGGAAGGAGATAGCAAAGGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATTCAATATTAAGCCTTTGTTT
 atttgat  putative branch site (score: 5)
                         tttttttctttttctt  putative PPT
                      ttatttttttcttttt  TA-rich tract