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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggttctgtcttgttaagcctatctttggcaagaattgatttattgaggtttgtagtgtatgttaattaaggttctctgaattctgattttaagtttgagtaatgcagGCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGG

Basic information

species Arabidopsis thaliana
transcript AT2G21960.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124985186|gb|EL057792.1|EL057792
EST:     TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT                         GCGGCTTTTCTTTTCACAGTAGT
genomic: TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttct ... agtaatgcagGCGGCTTTTCTTTTCACAGTAGT
EST: gi|86072272|gb|DR368029.1|DR368029
EST:     TCGGTATCAAGAATGCAGAGACTCTGGCCATTCCTAGTGTCAGGAACGAT                         GCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTT
genomic: TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttct ... agtaatgcagGCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTT
EST: gi|125139146|gb|EL178064.1|EL178064
EST:     TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGAT                         GCGGCTTTTCTTT-CACAGTAGT
genomic: TCGGTATCAAGAATGCAGAGACTCTGGCCATCCCTAGTGTCAGGAACGATgtaaggttct ... agtaatgcagGCGGCTTTTCTTTTCACAGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgtatgttaattaaggttctctgaattctgattttaagtttgagtaatgcagGCGGCTTTTCTTTTCACAGTAGTCGGATCAACTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGG
                            ttctgat  putative branch site (score: 3)
                          aattctgattttaa  TA-rich tract