Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacaatcttttttatctctgttgcattttttaaaaactgtatggttggtgttacttcctcatgattcaaatgttagtatctgactttgttatggtgtgaattgttaaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAGCAGATCTACACTCGTG

Basic information

species Arabidopsis thaliana
transcript AT2G21580.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036251|gb|DR332004.1|DR332004
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036228|gb|DR331981.1|DR331981
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036226|gb|DR331979.1|DR331979
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036287|gb|DR332040.1|DR332040
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86079503|gb|DR375260.1|DR375260
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036273|gb|DR332026.1|DR332026
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036221|gb|DR331974.1|DR331974
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|116414979|gb|EG457571.1|EG457571
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036231|gb|DR331984.1|DR331984
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036250|gb|DR332003.1|DR332003
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036291|gb|DR332044.1|DR332044
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036299|gb|DR332052.1|DR332052
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036223|gb|DR331976.1|DR331976
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|124985063|gb|EL057678.1|EL057678
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
EST: gi|164186355|gb|EL975796.1|EL975796
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAA
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAA
EST: gi|86036241|gb|DR331994.1|DR331994
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036264|gb|DR332017.1|DR332017
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036259|gb|DR332012.1|DR332012
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|164090674|gb|ES118321.1|ES118321
EST:     AATCCTCTCCGACCGTATGAGG                         ATTAATGGGCCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: AATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036278|gb|DR332031.1|DR332031
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036235|gb|DR331988.1|DR331988
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036249|gb|DR332002.1|DR332002
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAAGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036274|gb|DR332027.1|DR332027
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036270|gb|DR332023.1|DR332023
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036262|gb|DR332015.1|DR332015
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAA-GGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036267|gb|DR332020.1|DR332020
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036243|gb|DR331996.1|DR331996
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036266|gb|DR332019.1|DR332019
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|164038728|gb|ES110889.1|ES110889
EST:     AAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: AAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036254|gb|DR332007.1|DR332007
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036288|gb|DR332041.1|DR332041
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|125261929|gb|EL276014.1|EL276014
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTC
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTC
EST: gi|86036276|gb|DR332029.1|DR332029
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036227|gb|DR331980.1|DR331980
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036238|gb|DR331991.1|DR331991
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036212|gb|DR331965.1|DR331965
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036240|gb|DR331993.1|DR331993
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAKG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036242|gb|DR331995.1|DR331995
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036220|gb|DR331973.1|DR331973
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036281|gb|DR332034.1|DR332034
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036284|gb|DR332037.1|DR332037
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036295|gb|DR332048.1|DR332048
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036282|gb|DR332035.1|DR332035
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036294|gb|DR332047.1|DR332047
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036218|gb|DR331971.1|DR331971
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036236|gb|DR331989.1|DR331989
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036246|gb|DR331999.1|DR331999
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAA-GGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036230|gb|DR331983.1|DR331983
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036213|gb|DR331966.1|DR331966
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036244|gb|DR331997.1|DR331997
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036289|gb|DR332042.1|DR332042
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036247|gb|DR332000.1|DR332000
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036219|gb|DR331972.1|DR331972
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036258|gb|DR332011.1|DR332011
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|124808873|gb|EH894769.1|EH894769
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAA
EST: gi|86036297|gb|DR332050.1|DR332050
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036272|gb|DR332025.1|DR332025
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036222|gb|DR331975.1|DR331975
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|125031643|gb|EL103912.1|EL103912
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGG
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGG
EST: gi|86036237|gb|DR331990.1|DR331990
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036265|gb|DR332018.1|DR332018
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036234|gb|DR331987.1|DR331987
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036263|gb|DR332016.1|DR332016
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|152034092|gb|BP867368.2|BP867368
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGAAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036277|gb|DR332030.1|DR332030
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036292|gb|DR332045.1|DR332045
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036214|gb|DR331967.1|DR331967
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
EST: gi|86036293|gb|DR332046.1|DR332046
EST:     CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGG                         ATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT
genomic: CTCCCAAGTTCAAGCTCATCACTCCATCAATCCTCTCCGACCGTATGAGGgtatacaatc ... taaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgattcaaatgttagtatctgactttgttatggtgtgaattgttaaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAGCAGATCTACACTCGTG
                  atctgac  putative branch site (score: 3)
                                     tgaattgttaaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatacaatcttttttatctctgttgcattttttaaaaactgtatggttggtgttacttcctcatgattcaaatgttagtatctgactttgttatggtgtgaattgttaaaaatcagATTAATGGGTCTCTTGCGAGGAGGGCGATTAGGGAGCTAATGGCAAAAGGTTTGATCAGGATGGTCTCTGCACACTCGAGCCAGCAGATCTACACTCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT