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gtaagtattttctacagttcatgatattagttgtgaaatgagtttttttctcatgtgtttatataacttcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAAAGATTGATGGAGACAATTATCCTGAG
species | Arabidopsis thaliana |
transcript | AT2G21520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTG GGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAEST: gi|164165462|gb|EL987672.1|EL987672
genomic: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAA
EST: TACAACTATTCTTGATGTTCAAGGAGTG GGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAEST: gi|163994294|gb|ES119042.1|ES119042
genomic: TACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAA
EST: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTG GGATTGAAAAACTTTAACAAGTCTGCTCGAGATCEST: gi|125246398|gb|EL260483.1|EL260483
genomic: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATC
EST: TTCAAGTACAACTATTCTTGATGTTCAAGGAGTG GGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAEST: gi|164149687|gb|ES110021.1|ES110021
genomic: TTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAA
EST: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTG GGAT-GAAAAACTTTAACAAGTCTGCTCGAGATCEST: gi|164098627|gb|ES030720.1|ES030720
genomic: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATC
EST: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTG GGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAEST: gi|164189845|gb|ES133704.1|ES133704
genomic: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAA
EST: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTG GGATTGAAAA-CTTTAACAAGTCTGCTCGAGATCTTATCACACG
genomic: CAAAGAGGCATATTGATTCAAGTACAACTATTCTTGATGTTCAAGGAGTGgtaagtattt ... tcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACG
atattagttgtgaaatgagtttttttctcatgtgtttatataacttcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAAAGATTGATGGAGACAATTATCCTGAG
atataac putative branch site (score: 3)
tttatataacttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattttctacagttcatgatattagttgtgaaatgagtttttttctcatgtgtttatataacttcatattcagGGATTGAAAAACTTTAACAAGTCTGCTCGAGATCTTATCACACGATTACAAAAGATTGATGGAGACAATTATCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA