1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtaaacaaggttgatttcttagtctagttttgatagtcgtttacaaaagtcatcttgatgcgccattaatagtatatctttgcttgcttgattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGA
species | Arabidopsis thaliana |
transcript | AT2G20530.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCEST: gi|86023978|gb|DR319731.1|DR319731
genomic: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
EST: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCEST: gi|164105096|gb|EL968154.1|EL968154
genomic: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
EST: TGTTGGTATCAAAGACAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCEST: gi|86023959|gb|DR319712.1|DR319712
genomic: TGTTGGTATCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
EST: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCEST: gi|163976073|gb|EL970734.1|EL970734
genomic: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
EST: TCAAAG-CAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCEST: gi|86023969|gb|DR319722.1|DR319722
genomic: TCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
EST: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCEST: gi|47828978|gb|CK118662.1|CK118662
genomic: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
EST: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAG GTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
genomic: GAGGTCATCGAGCCATTGTCTTTAACCGGCTTGTTGGTATCAAAGACAAGgttagtccct ... gattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATC
aaaagtcatcttgatgcgccattaatagtatatctttgcttgcttgattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGA
attaatagtatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaaacaaggttgatttcttagtctagttttgatagtcgtttacaaaagtcatcttgatgcgccattaatagtatatctttgcttgcttgattatgtagGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- taaacaa
- - - - - - - - - - - - - -gttttga
- - - - - - - - - - - - - - - - - - - - - tacaaaa