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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT

Basic information

species Arabidopsis thaliana
transcript AT2G20450.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
                      |  |  |||| | || | |       |||||    ||||   ||   |   | |  | |   | |   | || | ||||||||||||||||||||||||| || |||||||||| |||||| ||||| |||||||| |||||  ||||||| || ||||||||||||||| | |||||
------------------gtgatgaaccattcttcggctatga-actttttttccactgttaagtgcagtt--ttaattgaatgccatcctgat-tacagATGTGAAGAACAAGTGGGAGAACAGCTCATGGGGTAAGAAACTGATTGTCCAGAAGAGGAGAGCATCCCTCAACGACTTTGACAGGTTCAAGGTTATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
        |||       |  ||    ||        |  |||  ||  || ||| ||  ||     ||    ||    | |   | |   ||| |  |||||| ||||||||||||||||| || |||||||| | ||| || ||||| |||||||| |||||  | |||||||| ||||||||||||||| | |||||
--------gttagtatgaatgttgtgctacc----aatcctatcagcagttatttatttctgtccatgtctaatctgagtggtggttattctattta-agATGTTAAGAACAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTAATTGTCCAGAAGAGGAGAGCGTCACTCAATGACTTTGACAGGTTCAAGGTTATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G028883_T01 (Zea mays), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
                      || | | | | | |  |   |      |  ||   || ||  |    | |  || || |  ||  |   |   |||||||||||| | |||||||||||| || |||||||| | ||| || ||||| |||||||| |||||  | |||||||| ||||||||||||||| |||||||
------------------gtgatttactgtccctggactcattctttaatacttacctgatgtcta---tagcccacctca--tcctatcctgactgcagATGTGAAAAGCAAGTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G140116_T01 (Zea mays), 3'ss of exon 3
--------------------gtgagtttgttgtagcat----acttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctcta---aagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
                    |||    | || |||||     ||  || |||   | |   | || | |    ||     |    |  |||      | || | | ||||    |   | | | |||||||||||| |||||||||||| || |||||||| | ||| || ||||| |||||||| |||||  | |||||||| ||||| ||||||||  ||||| |
gtaactctagagcttatgttgtggacctctt-tagcaccgccacactttattcaacttctatattctagatgattgcccataagagaatggtgacacttatttgatctcttgctattcttttttcagATGTGAAGACCAAGTGGGAGAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGAGCATCGCTCAATGACTTTGATAGGTTCAAAGTCATGCT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G168330_T02 (Zea mays), 3'ss of exon 3
------gtgagtttgttgtagcatac-ttttgattattcgtaggttttattggcctttttt-----tgttgttggttgggttgggtcatcttagctctaaagttatatgc-agATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
       |||   |  | |||   || | || |  |    |  | ||||||   || | ||     ||  | |  | | |     | ||    ||| |    || | |   |||||||||||  |||||||| || || |||||||| | ||| || ||||| |||||||| || ||||| |||| ||| ||||||||||||||| ||||| |
gtaatgatgaacctcatatagtggacctcttcagcaaagttgtgctttattcatctatattctagatgaagataatagtgacaattaattgatgctttgttattcttttttagATGTGAAGACGAAGTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattatt--cgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
       |   ||    | ||||  | | ||    |   | |||||||  || ||| ||| |   |     |   |  | |  |||      | ||   ||||||| |||||||||||||||||||||||||||||||| ||||| |||||    |||||||| ||  |||||||||||||||| ||||||||||| |||||
------gtagggtgcttttctttcaagtgttattatgactcttattggtattgtttggttataattgaaaataatttgtttatgctacttgttaatgaacagATGTTAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGAAAACTCATTGTTAGAAAGAGAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G35000.1 (Glycine max), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattattcgtaggttttat--tggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
    ||| ||||     | || | |||||||  ||   || ||  |  | ||   || |  |||      || | | || |||  | | ||    |   ||||||| |||| |||||||||||||||||||||||| |||||||| |||||    |||||||| ||  |||||||||||||||| ||||||||||| |||||
----gttcgttgc--ttttctatcgattattgttattgttaattttatcattaggttataattgaaaatatttgtttatgttacttgttaa----tgaacagATGTTAAGACCAAGTGGGAGAAGAGTTCATGGGGCAGGAAACTCATTGTCAGAAAGAGAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G00680.1 (Glycine max), 3'ss of exon 3
gtgagtttgttgtagcatacttt--tgattattcgtaggttttattgg--cctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
        ||||   ||   |||  |||  |        |||||||||   | ||| || |||||  |  | |||  |  ||||     | ||        ||||||| |||||||  |||||||||||||| ||||| || ||||| |||||||||||||| || ||  |||||||||| ||||| ||||||||||| |||||
--------gttggtacacgttttcatgaagaaattgttattttattggaagcatttctttttgttcatcagtttg--ttttcttg---ttgaa--------cagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA02G00680.1 (Glycine max), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattattcgtaggttttattgg--cctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
      ||| |  |   |      ||  | | ||   |||||||||   | ||| || |||||  |  | |||     | ||  |  | ||        ||||||| |||||||  |||||||||||||| ||||| || ||||| |||||||||||||| || ||  |||| ||||| ||||| ||||||||||| |||||
-----gttggtacaagttttcacggagaaattgtta-ttttattggaagcatttctttttgttcatcagtttg-----ttttctcattgaa--------cagATGTTAAGAACAGATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTTAATGACTTTGATAGGTTCAAGATAATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G06380.1 (Glycine max), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattatt--cgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT-------------
||   ||  |||     | || | |||||||    | | |  | ||  | ||   || |  |||      || | | || |||  | | ||    |   || |||| |||| | |||| ||||||||||||||||| |||||||| |||||    |||| ||| ||  |||||||||||||||| ||||||||||| |||||             
gttgtttcattgc--ttttctatcgattattgttattgttaattttatcattaggttataattgaaaatatttgtttatgttacttgttaa----tgaacaaatgttaagaccgagtgagagAAGAGTTCATGGGGCAGGAAACTCATTGTCAGAAAGATAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G08910.1 (Glycine max), 3'ss of exon 4
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT-------------
                                                                                                                                                   ||    |||||||| ||  |||||||||||||||| ||||||||||| |||||             
---------------------------------------------------------------------------------------------------------------------------------------------------gttagaaagagaagggcatccctcaatgattttgatagGTTCAAGATAATGTTGGCCAAGATCAAG

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA16G08910.1 (Glycine max), 3'ss of exon 3
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
||   || ||||     | |  | |||||||  ||   || |||    |  ||  ||| |   |||       |  | |  | |      | ||   ||||||| |||| |||||| | ||||||||||||||| |||||||| |||                                                     
gttgtttcgttgc--ttttccatcgattattgttattgttaatttttatcattaggttat-aattgaaaatatttgtttatgttacttgttaatgaacagATGTTAAGACCAAGTGAGGGAAGAGTTCATGGGGCAGGAAACTCATT-----------------------------------------------------

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv11s0118g00670.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
           |||      | | ||  |   |     | | ||  || | |||  | ||    |   ||   | ||||||  | |    ||    |||||||| ||||||||||||||||| ||||| ||||| || ||  | ||||| |||||||| || ||  | || ||||| ||||| |||||||||||||||||
-----------gtaatgacatgtggaaaaaatgggaactctttt--ccatatttgatagtcatctt--tttcattatcttaatttttcttttgatggcagATGTTAAGAACAAGTGGGAGAATAGTTCCTGGGGCAGAAAGTTGATTGTCCAGAAGAGGAGGGCCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTT

upper sequence: AT2G20450.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv05s0049g01310.t01 (Vitis vinifera), 3'ss of exon 4
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
          |  || | |  |  ||  | | |||  | ||||    |  | |||| |  |  ||    | | | ||| ||  |      ||    |||||||| ||||||||||||||||| || || ||||| || || || |||||||||||||| |||||  | || ||||| ||||| |||||||||||||||||
---------gtaaaggacatatgggaaaaatggtaactcttat----ccatgtttgataatcctttttctcgtttatcctaaattctt--ttgatggcagATGTTAAGAACAAGTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86022106|gb|DR317859.1|DR317859
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022072|gb|DR317825.1|DR317825
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022101|gb|DR317854.1|DR317854
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022085|gb|DR317838.1|DR317838
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022084|gb|DR317837.1|DR317837
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022068|gb|DR317821.1|DR317821
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATAGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022080|gb|DR317833.1|DR317833
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|164137045|gb|ES202814.1|ES202814
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022078|gb|DR317831.1|DR317831
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022070|gb|DR317823.1|DR317823
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|164225236|gb|ES178405.1|ES178405
EST:     AACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTAG                         ATGTGAAGAACAAGTGGG
genomic: AACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCT-Ggtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGG
EST: gi|86022096|gb|DR317849.1|DR317849
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022087|gb|DR317840.1|DR317840
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022077|gb|DR317830.1|DR317830
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022097|gb|DR317850.1|DR317850
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022075|gb|DR317828.1|DR317828
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|47828553|gb|CK118237.1|CK118237
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022093|gb|DR317846.1|DR317846
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|164066958|gb|ES124427.1|ES124427
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACT
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACT
EST: gi|86022092|gb|DR317845.1|DR317845
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022094|gb|DR317847.1|DR317847
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022090|gb|DR317843.1|DR317843
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|125043346|gb|EL115615.1|EL115615
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTAT
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAA-GTGGGAGAAGAGTTCATGGGGTAGGAAACTTAT
EST: gi|86022074|gb|DR317827.1|DR317827
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022088|gb|DR317841.1|DR317841
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022100|gb|DR317853.1|DR317853
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022076|gb|DR317829.1|DR317829
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022071|gb|DR317824.1|DR317824
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022104|gb|DR317857.1|DR317857
EST:     AACAGAGTTCCCAAAGA-GAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: AACAGAGTTCCCAA-GAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|164026728|gb|EL996325.1|EL996325
EST:     CAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022082|gb|DR317835.1|DR317835
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022081|gb|DR317834.1|DR317834
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTG--C
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|125200458|gb|EL215412.1|EL215412
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTAT
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTAT
EST: gi|86022091|gb|DR317844.1|DR317844
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022073|gb|DR317826.1|DR317826
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022089|gb|DR317842.1|DR317842
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022079|gb|DR317832.1|DR317832
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022067|gb|DR317820.1|DR317820
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022086|gb|DR317839.1|DR317839
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022069|gb|DR317822.1|DR317822
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|86022107|gb|DR317860.1|DR317860
EST:     CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
genomic: CAACAGAGTTCCCAAGAAGAAGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGC
EST: gi|164229571|gb|ES129688.1|ES129688
EST:     AGGTTTTGATTGAGGCAATGGAGAAGGCTG                         ATGTGAAGAACAGGTGGGAGAAGAGTTCATGGGGTAGGAAAC
genomic: AGGTTTTGATTGAGGCAATGGAGAAGGCTGgtgagtttgt ... ttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT
                                     ctctaaa  putative branch site (score: 3)
                                        taaagttatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttgttgtagcatacttttgattattcgtaggttttattggcctttttttgttgttggttgggttgggtcatcttagctctaaagttatatgcagATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA