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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttactgtggatctcttatctgtaagtcgatctcgttgtttggtacatcaatactcaaggtgaatttctttgttgtggaatgtatttgtaggctcgacagAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTCTTCTGGTGATCAATCTGGCCCAGGGGTATCACAGTCAGAGGTTCCTCCATCTAAAAGTTCTG

Basic information

species Arabidopsis thaliana
transcript AT2G19950.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877269|gb|AU238100.1|AU238100
EST:     CTTCTGGTAGGAAAGGGTCTCAAGGGAAGAGAACAAGTTCAAAGAAAAAG                         AAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTCTTCTGGTGATCAA
genomic: CTTCTGGTAGGAAAGGGTCTCAAGGGAAGAGAACAAGTTCAAAGAAAAAGgtatttactg ... ggctcgacagAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTCTTCTGGTGATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaatactcaaggtgaatttctttgttgtggaatgtatttgtaggctcgacagAAACTTGTAAAAGAAGAATCTTCTAACAAAAGAGATTCTTCTGGTGATCAATCTGGCCCAGGGGTATCACAGTCAGAGGTTCCTCCATCTAAAAGTTCTG
                 aatttcttt  TA-rich tract