1 5' 3' | 2 5' 3' | 3 5' 3' |
...aattttacacttggctattttcattgatctgcttaatgttgctgtttattggtttcatacgtgaatacaatctaaaccaaatgattgtgtaaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGACTCAGCGCCATCAGCAAAGGTCTCAGGGTTGCCAAGTCCGGTGCCAAGC
species | Arabidopsis thaliana |
transcript | AT2G19730.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACT-CTACAGGCCGGACTTEST: gi|164183129|gb|ES089551.1|ES089551
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTT
EST: CAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|164171075|gb|ES127161.1|ES127161
genomic: CAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCEST: gi|124782177|gb|EH872120.1|EH872120
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
EST: TCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|125020881|gb|EL093150.1|EL093150
genomic: TCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: ATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|124714749|gb|EH806151.1|EH806151
genomic: ATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTAEST: gi|164083585|gb|ES015988.1|ES015988
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGATGGACAACTACTAEST: gi|124993174|gb|EL065443.1|EL065443
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTA
EST: AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86066023|gb|DR361780.1|DR361780
genomic: AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|125056661|gb|EL126314.1|EL126314
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: GTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86066020|gb|DR361777.1|DR361777
genomic: GTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGGAAAGCTGCACTTGCTAGEST: gi|86066015|gb|DR361772.1|DR361772
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAG-AAAGCTGCACTTGCTAG
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|164166157|gb|ES064996.1|ES064996
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: TCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86066017|gb|DR361774.1|DR361774
genomic: TCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86066001|gb|DR361758.1|DR361758
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86079143|gb|DR374900.1|DR374900
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCMAAGGCTGTTGCTAACCAG GTGGTGGACAACTMCTMCAGGCCGGACTTGAAGAAMGCTGCACTTGCTAGAEST: gi|116439690|gb|EG482282.1|EG482282
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|164217888|gb|ES110066.1|ES110066
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCEST: gi|164053386|gb|ES104086.1|ES104086
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
EST: ATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|125193358|gb|EL208312.1|EL208312
genomic: ATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCEST: gi|164096261|gb|ES190700.1|ES190700
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGC
EST: TTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGACACTTGCTAGEST: gi|164231827|gb|ES014429.1|ES014429
genomic: TTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTG-CACTTGCTAG
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAAAACTACTACAGGCCGGACEST: gi|164102682|gb|ES046267.1|ES046267
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAA--CTACTACAGGCCGGAC
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCEST: gi|164212867|gb|ES152582.1|ES152582
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGC
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCAEST: gi|86066019|gb|DR361776.1|DR361776
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|164215323|gb|ES071576.1|ES071576
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: GGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|164055057|gb|ES144278.1|ES144278
genomic: GGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTAGCTAGEST: gi|163994940|gb|ES157390.1|ES157390
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTT-GCTAG
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAEST: gi|125091840|gb|EL149663.1|EL149663
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAA
EST: CCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|163992433|gb|ES117342.1|ES117342
genomic: CCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGA-GAAAGCTGCACTTGCTAGAEST: gi|116452423|gb|EG495015.1|EG495015
genomic: CCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86066018|gb|DR361775.1|DR361775
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|47830640|gb|CK120324.1|CK120324
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|124938658|gb|EL015266.1|EL015266
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|86066025|gb|DR361782.1|DR361782
genomic: AAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTACACTTGCTAGAEST: gi|86066021|gb|DR361778.1|DR361778
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|125224405|gb|EL238490.1|EL238490
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: CTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|164098198|gb|ES185614.1|ES185614
genomic: CTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: TCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGAEST: gi|124823121|gb|EH907987.1|EH907987
genomic: TCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGA
EST: ATCCTCAAGAAGGAATTCCCCTTAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGEST: gi|164182440|gb|ES113955.1|ES113955
genomic: ATCCTCAAGAAGGAATTCCCC--AGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTG
EST: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAG GTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAG
genomic: CTATCCTCAAGAAGGAATTCCCCAGGATGTCAAAGGCTGTTGCTAACCAGgtattactca ... aaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAG
ttattggtttcatacgtgaatacaatctaaaccaaatgattgtgtaaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGACTCAGCGCCATCAGCAAAGGTCTCAGGGTTGCCAAGTCCGGTGCCAAGC
atctaaa putative branch site (score: 3)
taaatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttacacttggctattttcattgatctgcttaatgttgctgtttattggtttcatacgtgaatacaatctaaaccaaatgattgtgtaaatgtttagGTGGTGGACAACTACTACAGGCCGGACTTGAAGAAAGCTGCACTTGCTAGACTCAGCGCCATCAGCAAAGGTCTCAGGGTTGCCAAGTCCGGTGCCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - ctgctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaacc