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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcaatcacattccggaactggattctttcccttaagcctttttgtaaaagattgacaatgtttatattattctcttcccacagGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTTTTTATAATCCAAGCGTTACCA

Basic information

species Arabidopsis thaliana
transcript AT2G19080.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86050759|gb|DR346514.1|DR346514
EST:     GAAGCTTTGTCGACTAGGTTAGGTGAGCAGAAGTTTCTCTTTGAAGACAG                         GCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTTTTTATAATCCA
genomic: GAAGCTTTGTCGACTAGGTTAGGTGAGCAGAAGTTTCTCTTTGAAGACAGgtattgcaat ... cttcccacagGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTTTTTATAATCCA
EST: gi|86050758|gb|DR346513.1|DR346513
EST:     GAAGCTTTGTCGACTAGGTTAGGTGAGCAGAAGTTTCTCTTTGAAGACAG                         GCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTTTTTATAATC-A
genomic: GAAGCTTTGTCGACTAGGTTAGGTGAGCAGAAGTTTCTCTTTGAAGACAGgtattgcaat ... cttcccacagGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTTTTTATAATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccttaagcctttttgtaaaagattgacaatgtttatattattctcttcccacagGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTTTTTATAATCCAAGCGTTACCA
                     gattgac  putative branch site (score: 3)
                                    tattattctcttccc  putative PPT
                taaaagattgacaatg  TA-rich tract