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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatctttttcctttgaagaagaagagaggattctcttagcttgtgaaggattgatatatcatgttgtgtctccttctcttttgattgttttagGAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTTTGTCTGGAACCGATCCACG

Basic information

species Arabidopsis thaliana
transcript AT2G18290.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467243|gb|EG509835.1|EG509835
EST:     CACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAG                         GAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCT
genomic: CACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGgtaatatctt ... attgttttagGAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCT
EST: gi|86079120|gb|DR374877.1|DR374877
EST:     CACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAG                         GATATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCT
genomic: CACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGgtaatatctt ... attgttttagGAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCT
EST: gi|19877766|gb|AU238597.1|AU238597
EST:     CACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAG                         GAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCT
genomic: CACCAAGTAAAATCTCTATTCGAGCTGGTGATGGTTTTCATAACTTAAAGgtaatatctt ... attgttttagGAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgtgaaggattgatatatcatgttgtgtctccttctcttttgattgttttagGAGATTAAAAGTGTGGAGCTTGTTAAACCAACTGGTTGGGTTTGCTTATCTTTGTCTGGAACCGATCCACG
                                        ttttgat  putative branch site (score: 4)
                              tctccttctcttttga  CT-rich tract
                                        ttttgattgtttta  TA-rich tract