1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtaaaatcgagtatttggaattgaaactcctggttatttggatatggaaagtgttttaagagaaggatgtaaattttggtttgatgaatatagGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATATGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATT
species | Arabidopsis thaliana |
transcript | AT2G17840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTAATGTCAACCTCTTCCACTGTTTACAACCGAACTCGTTGATCACAA AEST: gi|124808295|gb|EH894493.1|EH894493
genomic: ATGTAATGTCAACCTCTTCCACTGTT-ACAACCGAACTCGTTGATCACAAgtaagtaaaa ... atgaatatag-
EST: ATGTAATGTCAACCTCTTCCACTGTTTACAACCGAACTCGTTGATCACAA AEST: gi|124811596|gb|EH896462.1|EH896462
genomic: ATGTAATGTCAACCTCTTCCACTGTT-ACAACCGAACTCGTTGATCACAAgtaagtaaaa ... atgaatatag-
EST: AATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAA GTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGA
genomic: AATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAgtaagtaaaa ... atgaatatagGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGA
tggatatggaaagtgttttaagagaaggatgtaaattttggtttgatgaatatagGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATATGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATT
gtttgat putative branch site (score: 5)
atgtaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaatcgagtatttggaattgaaactcctggttatttggatatggaaagtgttttaagagaaggatgtaaattttggtttgatgaatatagGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGATGCAGCAGGATATGCGCTTGGCACAGCCTGGGTTGCTTTCAAAATAAGAAAGGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA