Sequence
atgc intronic sequence ATGC exonic sequencegtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttactagcctctcccatggacttgatcttgtgttgcaaatttttgttttgcagGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G16430.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G16430.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g00230.t01 (Vitis vinifera), 3'ss of exon 3
gtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttac-tagcctctc----ccatggacttgatcttgtgttgcaaatttttgttttgcagGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATA
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-------cattatgtat-ttagtgtgtccatatgttttcataaatgtttgtttagcattgttttttgattcctttgggtcgat-tcactctactgagcattgctt-gcagGGGATCTTGGGCAGAGTTATGATTCAAATATGACACTTACGCACTATGAATTGAACCCTGCAAAGGGAAAAACCGTGTTGTTTGTTGGAGACCTTTCATA
upper sequence: AT2G16430.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g00250.t01 (Vitis vinifera), 3'ss of exon 3
gtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttac--tagcctct---cccatggacttgatcttgtgttgcaaatttttgttttgcagGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATA
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-------cattatgcat-ttagtgtgtccatatgttttcataaatgcttgtttagcgttggtttttgattcctttgggtcgat-tcactctactgagcattgctt-gcagGGGATCTTGGGCAGAGTTATGATTCAAATATGACACTTACGCACTATGAATTGAACCCTGCGAAGGGAAAAACCGTGTTGTTTGTTGGAGACCTTTCATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124799208|gb|EH888887.1|EH888887EST: TTTTGGTCTCATTG GGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGA
genomic: TTTTGGTCTCATTGgtactgtcct ... tgttttgcagGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttactagcctctcccatggacttgatcttgtgttgcaaatttttgttttgcagGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGAATAACCCAACAAAAGGGCAAGCGGTTTTGTTCGTCGGCGATATCTCATA
acttgat putative branch site (score: 5)
tttttgtttt putative PPT
aaatttttgtttt TA-rich tract