Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatattagtcattttcatctgtattttcctccggcgtttcatagttataatctttgaataatccgttcgtttgtgattgacatattatattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAG

Basic information

species Arabidopsis thaliana
transcript AT2G14740.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA20G27000.1 (Glycine max), 3'ss of exon 3
gtaaatattagtcattttcatctgtattttcctccggcgtttcatagttataatctttgaataatccgtt---cgtttgtgattgacatattatattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAG
|||    |   |    || ||  || ||||  |      |  |||     |  |     |  |    |||     |   |  || ||| | ||   | |||||||||| ||||| ||| | |||||||||||||||||||||||  | |||||||| || |||||||| ||||
gtactcctctatttcattaattagttttttattttatgttaccatttaattggttgcacatcagattgttatatatagatttttaacaaactagtgtttgtagGTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG

upper sequence: AT2G14740.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA10G40340.1 (Glycine max), 3'ss of exon 3
--------gtaaat-attagtca--ttttcatctgtattttcctccggcgtttcatagttataatctttgaataatccgttcgtttgtgattgacatattatattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAG
         ||  | |||| | |  |||| || | ||||||      || ||| || | | | |  |  || |  |   |     | |  || ||| | ||   | |||||||||| ||||| ||| | |||||||||||||||||||||||  | |||||||| || |||||||| ||||
gtactcctttatttcattaattagttttttatttttattttatgttagcatttaattggtttcacatcagattgttatatatagattt--ttaacaaactaatatttgtagGTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164040032|gb|ES105139.1|ES105139
EST:     CTGACTTGG-CAATCCAGTTCTTAAGGAAGAACAAGATGCTCAA                         GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGC-TACCTTGGTTGTC
genomic: CTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatatta ... tattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTC
EST: gi|164179435|gb|ES183814.1|ES183814
EST:     CTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAA                         GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTAGCCTACCTTGGTTGT
genomic: CTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatatta ... tattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATT-GCCTACCTTGGTTGT
EST: gi|125279153|gb|EL293238.1|EL293238
EST:     TGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAA                         GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTC
genomic: TGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatatta ... tattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttataatctttgaataatccgttcgtttgtgattgacatattatattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCAACAACAGACAGTACCGAG
                                gattgac  putative branch site (score: 3)
                                 attgacatattatatt  TA-rich tract