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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattactgttcccacatctgaatttgactcttctgtacgtaacctgttttgggtttgacatattatattatgtagGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAG

Basic information

species Arabidopsis thaliana
transcript AT2G14720.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14720.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G27000.1 (Glycine max), 3'ss of exon 3
-------------------gtaaattactgttcccacatctgaatttgactcttctgtacgt-aacctgttttgggt------ttgacatattatattatgtagGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAG
                    | | ||  |  |   |  |    |||| | |  | || || | |   |||| |   |      || ||| | ||   | |||||||||| |||||  || | |||||||||||||||||||||||  |||||||||| || |||||||| ||||
gtactcctctatttcattaattagttttttattttatgttaccatttaattggt-tgcacatcagattgttatatatagatttttaacaaactagtgtttgtagGTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG

upper sequence: AT2G14720.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G40340.1 (Glycine max), 3'ss of exon 3
-----------------------gtaaattactgtt--cccacatctgaatttgactcttctgtacgtaacctgttttgggt------ttgacatattatattatgtagGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAG
                       ||   ||| | ||     |  |  | |||| | |  | |      |   |||| |   |      || ||| | ||   | |||||||||| |||||  || | |||||||||||||||||||||||  |||||||||| || |||||||| ||||
gtactcctttatttcattaattagttttttatttttattttatgttagcatttaattggtttcacatcagattgttatatatagatttttaacaaactaatatttgtagGTTGGTAAGGGGTCACGAGGTGATGTTACCATATTGCCTACTCTAGTTGTCAATAATAGACAGTATCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164230672|gb|EL982662.1|EL982662
EST:     CTGATGCTGACTTGGACAATCCAGTTTTAAAGGAAGAACAAGATGCTCAA                         GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTC
genomic: CTGATGCTGACTTGGACAATCCAGTTTTAAAGGAAGAACAAGATGCTCAAgtaaattact ... tattatgtagGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTC
EST: gi|124916621|gb|EH990495.1|EH990495
EST:     CTGATGCTGACTTGGACAATCCAGTTTTAAAGGAAGAACAAGATGCTCAA                         GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTG
genomic: CTGATGCTGACTTGGACAATCCAGTTTTAAAGGAAGAACAAGATGCTCAAgtaaattact ... tattatgtagGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgactcttctgtacgtaacctgttttgggtttgacatattatattatgtagGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAG
                                 tttgacatattatatt  TA-rich tract