Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G14120.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G06380.1 (Glycine max), 3'ss of exon 3
gtgctattt-ctctcctcataagtttgctt-tagatttagctgtgatggcaaactact-ctat-ttctcacga--ttgctctatt-ttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
|| |  | |  ||| || | |  ||  ||   | |||||    |  ||  || ||  | | || |||| || |  ||   || || || | |   ||  |||||||||| ||||||||||||||||||||||||||||   | || ||||||   ||||||||||||||||| || || || ||||||||||| ||||| |
gttcggtatattcttctaacattttaactgacacatttatgaattttgttaagctgttgccatgttctgacaatgttaggctcttgttatttggaatgtagTTGGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGG

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G32940.1 (Glycine max), 3'ss of exon 3
gtgctatttctctcctcataagtttgctttagatttagctgtga----tggcaaactact-ctatttctcacgattgct--ctattttctctctg--attcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
||||  | |        |  | |||   | | |  ||  |||||    ||  || ||  | | || |      |||| |    ||||  | | ||  ||  |||||||||| |||||||||||||||||||| |||||||   | || ||||||   |||||||| |||||||| || || || ||||||||||| ||||| |
gtgcggtatactcttctagcattttaactgacacatatttgtgaattttgttaagctgttgccatgttctgacattgttaggcatttgttatttggaatgtagTTGGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGG

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 3
gtgctattt-ctctcctcataagtttgctt-tagatttagctgtga---tggc-aaactact-ctat-ttctcacgat-tgctctattttctctctg--attcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
|| |  | |  ||| || | |  ||  ||   |  | ||  |||||   |||  || ||  | | || |||| || || |     | ||    | ||  ||  |||||||||| ||||||||||||||||||||||||||||   | || ||||||   ||||| || |||||||| || || || |||||||||||| | || |
gttcggtatattctactaacattttaactgacacgtatatttgtgaaattggttaagctgttgccatgttctgacaatgttaggcacttgtaatttggaatgtagTTGGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGG

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 3
-------------gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctc---tattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
             ||||| |     |    ||  ||   | ||    |||  | || ||      | || | || || || | ||      | | || | |  | |  |||||||||| ||||| |||||||||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||
gtataggcttatagtgctgtactgttttaaatgtgtgaacgtttttgttaagtttgctgtggtgtttctgt-ttactgacaagtgtgggggtgtgttgtgttggttgtagTTGGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAG

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 3
----------gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
          ||  || |  | |     |  |   | ||| |  | |  |||| ||      | || | || || || | ||      | | |   ||  | |||||||||| ||||| ||||| |||||||| |||||||   | || ||||||   ||||| || |||||||| || || || ||||| |||||||||||||
gtataatgttgtagtactgtttttaatgtgtgaacgtttttg--tgaagtgtgttgtggtgtttctgt-ttactgacaagtgtgggggtgtgt---tgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG

upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 3
gtgctatttctctcctc-ataagtttgctttagatttagctgtga-----tggcaaactactcta--tttctcacga---ttgctctattttctctctga---ttcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
||||||| | ||  ||  ||   ||||  |||    |  |||||      | |||| ||  | |   ||||| | ||   |||    ||   |    ||    |||||||||| ||||||||||||||||| ||||| || |||    | || ||||||   ||||| ||||||||||| ||| | || ||||| |||||||||||||
gtgctatatatcaacttgatttttttgtcttatgaatgcctgtgcaacatttgcaagcttttatcattttctaatgaggtttggcaaataccccacttgtaatttcagTTGGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443268|gb|EG485860.1|EG485860
EST:     GTCATAGAACCATAGGTGTAATCACAAAG                         TTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAA
genomic: GTCATAGAACCATAGGTGTAATCACAAAGgtgctatttc ... tctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
                              ttgctctattttctct  CT-rich tract
                                  tctatttt  TA-rich tract