Sequence
atgc intronic sequence ATGC exonic sequencegtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G14120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA15G06380.1 (Glycine max), 3'ss of exon 3
gtgctattt-ctctcctcataagtttgctt-tagatttagctgtgatggcaaactact-ctat-ttctcacga--ttgctctatt-ttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
|| | | | ||| || | | || || | ||||| | || || || | | || |||| || | || || || || | | || |||||||||| |||||||||||||||||||||||||||| | || |||||| ||||||||||||||||| || || || ||||||||||| ||||| |
gttcggtatattcttctaacattttaactgacacatttatgaattttgttaagctgttgccatgttctgacaatgttaggctcttgttatttggaatgtagTTGGATATAATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCTCTTCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGG
upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA13G32940.1 (Glycine max), 3'ss of exon 3
gtgctatttctctcctcataagtttgctttagatttagctgtga----tggcaaactact-ctatttctcacgattgct--ctattttctctctg--attcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
|||| | | | | ||| | | | || ||||| || || || | | || | |||| | |||| | | || || |||||||||| |||||||||||||||||||| ||||||| | || |||||| |||||||| |||||||| || || || ||||||||||| ||||| |
gtgcggtatactcttctagcattttaactgacacatatttgtgaattttgttaagctgttgccatgttctgacattgttaggcatttgttatttggaatgtagTTGGATATAATGGACAGAGGTACTGATGCCCGGAATCTGTTACTAGGAAAAGTTATTCCTCTCCGACTTGGTTATGTAGGTGTTGTAAATCGCAGTCAGG
upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 3
gtgctattt-ctctcctcataagtttgctt-tagatttagctgtga---tggc-aaactact-ctat-ttctcacgat-tgctctattttctctctg--attcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
|| | | | ||| || | | || || | | || ||||| ||| || || | | || |||| || || | | || | || || |||||||||| |||||||||||||||||||||||||||| | || |||||| ||||| || |||||||| || || || |||||||||||| | || |
gttcggtatattctactaacattttaactgacacgtatatttgtgaaattggttaagctgttgccatgttctgacaatgttaggcacttgtaatttggaatgtagTTGGATATCATGGACAGAGGTACTGATGCTCGGAATCTGTTACTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTAGGTGTTGTAAATCGTTGCCAGG
upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA07G30150.1 (Glycine max), 3'ss of exon 3
-------------gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctc---tattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
||||| | | || || | || ||| | || || | || | || || || | || | | || | | | | |||||||||| ||||| |||||||||||||| ||||||| | || |||||| ||||| || |||||||| || || || ||||| |||||||||||||
gtataggcttatagtgctgtactgttttaaatgtgtgaacgtttttgttaagtttgctgtggtgtttctgt-ttactgacaagtgtgggggtgtgttgtgttggttgtagTTGGATATCATGGATAGAGGTACTGATGCCCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAG
upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA08G07160.1 (Glycine max), 3'ss of exon 3
----------gtgctatttctctcctcataagtttgctttagatttagctgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
|| || | | | | | | ||| | | | |||| || | || | || || || | || | | | || | |||||||||| ||||| ||||| |||||||| ||||||| | || |||||| ||||| || |||||||| || || || ||||| |||||||||||||
gtataatgttgtagtactgtttttaatgtgtgaacgtttttg--tgaagtgtgttgtggtgtttctgt-ttactgacaagtgtgggggtgtgt---tgtgttagTTGGATATCATGGATAGAGGCACTGATGCGCGGAATCTGTTGCTAGGAAAAGTTATTCCCCTCCGACTTGGTTATGTCGGTGTTGTGAATCGTAGTCAAG
upper sequence: AT2G14120.2 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 3
gtgctatttctctcctc-ataagtttgctttagatttagctgtga-----tggcaaactactcta--tttctcacga---ttgctctattttctctctga---ttcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
||||||| | || || || |||| ||| | ||||| | |||| || | | ||||| | || ||| || | || |||||||||| ||||||||||||||||| ||||| || ||| | || |||||| ||||| ||||||||||| ||| | || ||||| |||||||||||||
gtgctatatatcaacttgatttttttgtcttatgaatgcctgtgcaacatttgcaagcttttatcattttctaatgaggtttggcaaataccccacttgtaatttcagTTGGACATTATGGACAGAGGTACCGATGCCCGCAATTTATTGCTTGGAAAAGTGATTCCCCTTCGACTTGGTTACATAGGTGTTGTGAATCGTAGTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116443268|gb|EG485860.1|EG485860EST: GTCATAGAACCATAGGTGTAATCACAAAG TTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAA
genomic: GTCATAGAACCATAGGTGTAATCACAAAGgtgctatttc ... tctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgatggcaaactactctatttctcacgattgctctattttctctctgattcagTTGGATATTATGGACAGAGGTACTGATGCTCGGAATCACCTTCTGGGAAAAACAATTCCTCTTCGACTTGGATACGTGGGAGTTGTAAATCGTAGTCAAG
ttgctctattttctct CT-rich tract
tctatttt TA-rich tract