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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaactcgttttccttttttggtctatttgctgtgaaagattttggttactacgcttgtttttagtttctgaagaggttatttacttcgatttttacgttgcttttagGTTTTGATTAACAATATTGAGGAGTATGCGCCGATAGTGTATACTCCTACGGTAGGTCTTGTCTGCCAGAACTACAGTGGGTTGTTTAGGAGGCCAAGGG

Basic information

species Arabidopsis thaliana
transcript AT2G13560.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13560.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 3
-gtgaactcgttttccttttttggtctatttgctgtgaaagattttggttactacgcttgtttttagtttctgaagaggttatttacttcgatttttacgttgcttttagGTTTTGATTAACAATATTGAGGAGTATGCGCCGATAGTGTATACTCCTACGGTAGGTCTTGTCTGCCAGAACTACAGTGGGTTGTTTAGGAGGCCAAGGG
  ||||   ||| |  |   |   || |  | | ||      |       ||  ||         |       | || |||||||     ||  | |    |  ||| |||||||||||  ||| || ||||| ||||| || |||||||||||||| || || |||||||| || |||||||| |||||  ||||||| || ||||| |
attgaagatgttcttgtgcatct-tccaaatcccgtt-----tcccccccaccccgtccccccaaaag----aatgatgttattttgaatgacatgtcttatattttcagGTTTTGATTGCCAAAATAGAGGAATATGCACCAATAGTGTATACTCCAACAGTGGGTCTTGTATGTCAGAACTATAGTGGACTGTTTAGAAGACCAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125283500|gb|EL297585.1|EL297585
EST:     GGCGGATTCTTAATCGGTTACATGACCGAAATGAGACTATGTACTATAAG                         GTTTTGATTAACAAATATTGAGGAGTATGCGCCGATAGT
genomic: GGCGGATTCTTAATCGGTTACATGACCGAAATGAGACTATGTACTATAAGgtgaactcgt ... ttgcttttagGTTTTGATTAACAA-TATTGAGGAGTATGCGCCGATAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgtttttagtttctgaagaggttatttacttcgatttttacgttgcttttagGTTTTGATTAACAATATTGAGGAGTATGCGCCGATAGTGTATACTCCTACGGTAGGTCTTGTCTGCCAGAACTACAGTGGGTTGTTTAGGAGGCCAAGGG
                                             ttgctttt  CT-rich tract
     tttttagttt  TA-rich tract