1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgttaattagttataatagtactctttctatttcaatctaaagtattgttttcttatagtgtttgaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTGGAATACACTGGAGAGAGAAATGAACATGGAGCAATCCTTGCTGGTTCT
species | Arabidopsis thaliana |
transcript | AT2G05160.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAG GCCTCATGGGCAACATTCAGTTATATTAGTAGAAGATGCATCAAAGTTTGTEST: gi|86059177|gb|DR354934.1|DR354934
genomic: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtttgttaat ... gaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGT
EST: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAG GCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTEST: gi|116400957|gb|EG443549.1|EG443549
genomic: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtttgttaat ... gaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGT
EST: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAG GCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTEST: gi|116400952|gb|EG443544.1|EG443544
genomic: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtttgttaat ... gaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGT
EST: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACGG GCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTEST: gi|116400959|gb|EG443551.1|EG443551
genomic: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtttgttaat ... gaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGT
EST: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAG GCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTEST: gi|116400956|gb|EG443548.1|EG443548
genomic: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtttgttaat ... gaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGT
EST: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAG GCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATACATCAAAGTTTGT
genomic: CTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtttgttaat ... gaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGT
tactctttctatttcaatctaaagtattgttttcttatagtgtttgaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTGGAATACACTGGAGAGAGAAATGAACATGGAGCAATCCTTGCTGGTTCT
atctaaa putative branch site (score: 3)
tattgttttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttaattagttataatagtactctttctatttcaatctaaagtattgttttcttatagtgtttgaatttgtagGCCTCATGGGCAACATTCAGTTATATTAGCAGAGGATGCATCAAAGTTTGTGGAATACACTGGAGAGAGAAATGAACATGGAGCAATCCTTGCTGGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA