1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgaacagtttccaatatgatttgctattgttcttttatctaaacccgcaaggtgttcatgattcctctggctgtgatgttaatgcttatcgtcttacagGTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAG
species | Arabidopsis thaliana |
transcript | AT2G04400.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAAGAAGGCTTCTCCAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCG GTCGAGATTGCTCAAGCTTATGAAAAAGGCGGEST: gi|125017076|gb|EL089345.1|EL089345
genomic: TTAAGAAGGCTTCTCCAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCGgtatgttata ... cgtcttacagGTCGAGATTGCTCAAGCTTATGAAAAAGGCGG
EST: CAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCG GTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTTEST: gi|19877515|gb|AU238346.1|AU238346
genomic: CAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCGgtatgttata ... cgtcttacagGTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTT
EST: TTAAGAAGGCTTCTCCAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCG GTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTT
genomic: TTAAGAAGGCTTCTCCAAGTAGAGGAATCTTAAAAGAGAATTTTGACCCGgtatgttata ... cgtcttacagGTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTT
ccgcaaggtgttcatgattcctctggctgtgatgttaatgcttatcgtcttacagGTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAG
tgttaat putative branch site (score: 3)
tcgtctt putative PPT
atgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacagtttccaatatgatttgctattgttcttttatctaaacccgcaaggtgttcatgattcctctggctgtgatgttaatgcttatcgtcttacagGTCGAGATTGCTCAAGCTTATGAAAAAGGCGGAGCAGCATGCCTCAGCGTTTTGACAGACCAGAAGTATTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - -ctaaacc