1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaactcttctcttcaactactcttaactgatttttttcctctgttcttattaactcttttgttttcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCTGC
species | Arabidopsis thaliana |
transcript | AT2G03600.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCEST: gi|116437778|gb|EG480370.1|EG480370
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCCAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCEST: gi|116437754|gb|EG480346.1|EG480346
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCEST: gi|116437674|gb|EG480266.1|EG480266
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCEST: gi|116437773|gb|EG480365.1|EG480365
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCEST: gi|116437774|gb|EG480366.1|EG480366
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCEST: gi|116437711|gb|EG480303.1|EG480303
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
EST: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCG GCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
genomic: TGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGgtaaactctt ... tcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCC
ctcttaactgatttttttcctctgttcttattaactcttttgttttcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCTGC
tattaac putative branch site (score: 1)
tttttttcctctgttc CT-rich tract
ttattaactctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactcttctcttcaactactcttaactgatttttttcctctgttcttattaactcttttgttttcaacaacagGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT