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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttatctaaatcatgccttttgtttttttatttgtttatctgtggtcaagtcatgacacggttatgtgtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163988406|gb|ES003051.1|ES003051
EST:     AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAA
EST: gi|116442939|gb|EG485531.1|EG485531
EST:     AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050554|gb|DR346309.1|DR346309
EST:     AATGCTGTGCTAACAS-TTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050556|gb|DR346311.1|DR346311
EST:     AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050548|gb|DR346303.1|DR346303
EST:     AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050557|gb|DR346312.1|DR346312
EST:     ATGCTGTGCTAACMS-TTNACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: ATGCTGTGCTAACAGCTT-ACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050552|gb|DR346307.1|DR346307
EST:     AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050550|gb|DR346305.1|DR346305
EST:     AATGCTGTGCTAAC-MSTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050551|gb|DR346306.1|DR346306
EST:     AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: gi|86050549|gb|DR346304.1|DR346304
EST:     AATGCTGTGCTAACMS-TTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC                         AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttatttgtttatctgtggtcaagtcatgacacggttatgtgtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGACAATCTTATCGTCTGGCGTTTTCCTTATTTCAAGT
     ttatttgtttatct  TA-rich tract