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gtatggtctttttttagttgttttagttgatgagttaaatgaattgtgaatgtgatgaactggtttagcttagcatttatcagtgaatctgcagTTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATGACAATGCCAAGAGAGAGCAGTTGCTTCAAGGTGTTCAGAGTTTGCCTAT
species | Arabidopsis thaliana |
transcript | AT2G03070.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAA TTTTACCGGGTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATGEST: gi|116475757|gb|EG518349.1|EG518349
genomic: AAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAAgtatggtctt ... gaatctgcagTTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATG
EST: AAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAA TTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATG
genomic: AAATGCGTTTGTTGTGCTTCCTAAGAACGTCAATGCTATGAACGCTGCAAgtatggtctt ... gaatctgcagTTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATG
tgaattgtgaatgtgatgaactggtttagcttagcatttatcagtgaatctgcagTTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATGACAATGCCAAGAGAGAGCAGTTGCTTCAAGGTGTTCAGAGTTTGCCTAT
atttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtctttttttagttgttttagttgatgagttaaatgaattgtgaatgtgatgaactggtttagcttagcatttatcagtgaatctgcagTTTTACCGGTTATGTTGTCTTCGAAATTACTACCGGAGATGGAAACTGATGACAATGCCAAGAGAGAGCAGTTGCTTCAAGGTGTTCAGAGTTTGCCTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG