1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attctgaatctcatcaaattcttctctggcattaggtttgtttgaacaacttagctatcacttgcctttaagcttatgccatggaccgattctttttcagGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGCGGCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAAT
species | Arabidopsis thaliana |
transcript | AT2G02470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAG GAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGEST: gi|124983946|gb|EL056643.1|EL056643
genomic: TCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGgtaagggtcc ... tctttttcagGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCG
EST: TCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAG GAAGAG-CTGTTCCAGAEST: gi|19875808|gb|AU236639.1|AU236639
genomic: TCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGgtaagggtcc ... tctttttcagGAAGAGGCTGTTCCAGA
EST: TCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAG GAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGT
genomic: TCTGTTGCATTTTACTTTGGTGCACGTTTCGGATTTGGCAAGAATGAGAGgtaagggtcc ... tctttttcagGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGT
acaacttagctatcacttgcctttaagcttatgccatggaccgattctttttcagGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGCGGCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAAT
ttctttttc CT-rich tract
attcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctgaatctcatcaaattcttctctggcattaggtttgtttgaacaacttagctatcacttgcctttaagcttatgccatggaccgattctttttcagGAAGAGGCTGTTCCAGATGATTAATGAGCTGCCAACCATTTTCGAAGTTGTGAGCGGCAATGCAAAGCAGTCCAAGGATCTATCTGTTAACAACAATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG