1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtatcttcctctatctttctcaattcatatgttctttaataatgcatagtatgttagttcaaatgattcaatgctttcattaagtaaccaatcttgtcatgtgcttttgcaagGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAAC
species | Arabidopsis thaliana |
transcript | AT2G01450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACT GACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCEST: gi|116408403|gb|EG450995.1|EG450995
genomic: GCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACTgtatgtatct ... cttttgcaagGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTC
EST: GACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACT GACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCEST: gi|116408404|gb|EG450996.1|EG450996
genomic: GACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACTgtatgtatct ... cttttgcaagGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTC
EST: GACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACT GACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTC
genomic: GACTTGCTCGTGTCTCCTTTACTGATTCCCCTTCTGCTGTGTTTTGGACTgtatgtatct ... cttttgcaagGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTC
tcaaatgattcaatgctttcattaagtaaccaatcttgtcatgtgcttttgcaagGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAAC
aagtaac putative branch site (score: 2)
tgctttt putative PPT
tttcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatcttcctctatctttctcaattcatatgttctttaataatgcatagtatgttagttcaaatgattcaatgctttcattaagtaaccaatcttgtcatgtgcttttgcaagGACTACGTTGCTACAAGATGGTACCGTGCGCCAGAGCTCTGTGGTTCCTTCTATTCTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT